It's not because the axle, I had this problem before when designing a yoyo (Beast from DTI). The vibe is pulsing and worse, like a discoball, I'm sorry I can't provide the video, since Mike (the DTI owner) seemed to have deleted it.
It happened when I (I think it's my fault) decided to re-design the Bassboost to improve stability, so I decided to send the yoyo weight to the outer side of the rim... So it supposed to give more rim weight... It was a bad idea

But finally we can fix the problem by reducing some of the rim weight and transferred it closer to the gap, the Beast spins smoothly...
What I think to be the cause is when you send the weight to very outer rim (I mean toward the side) there is a "spinning sideways" effect... The yoyo tends to spin to the side rather than going in correct direction.
By looking at Sleipnir's design (I haven't throw any) I could see slight difference between yoyo direction and throwing direction could cause this, I assume regens are vibey with them (could someone test this for me?)...
Try touching your nail when the yoyo spins, it could fix the vibe. Also you can use the string to touch the inner wall a bit.
This also the reason why Sleipnir (and other YYR) have similar shapes , which are very stable and solid. They push the stability very close into the vibe limit...
Another reason is your axle bent or too loose.